aoutools: Tools for All of Us Researcher Workbench

aoutools is a Python library designed to simplify common analysis tasks on the All of Us Researcher Workbench.

Note

Disclaimer: This project is not affiliated with, endorsed by, or sponsored by the All of Us Research Program. The software is provided as is, without warranty. It is in an early stage of development, and its functions, APIs, and signatures may change periodically.

Overview

aoutools aims to provide a suite of high-level functions designed to make All of Us data analyses more accessible. The initial release focuses on the aoutools.prs submodule for calculating Polygenic Risk Scores (PRS).

Getting Started

• Installation
  • From PyPI
  • From GitHub
  • Troubleshooting
• How-To Guides
  • How-To: Calculate a Polygenic Risk Score (PRS)
  • How-To: Use the calculate_pgs Workflow
  • How-To: Using the download_pgs Function

Reference

• API Reference
  • aoutools.prs